Black Forest Chocolate Chip and Cherry Stuffed Bagels

Vegan
No Egg
No Dairy
No Butter

These Black Forest chocolate and cherry stuffed bagels are a luxurious breakfast treat. Rich cocoa dough is folded around sweet cherries and melty chocolate chips, creating a gooey, indulgent center with every bite. The dough is slightly firm for a classic bagel chew, while almond flour adds a tender, buttery note that complements the dark chocolate and bright cherries.

Chocolate & Cherry Stuffed Bagels

Here’s why I love this recipe

  • Vegan-friendly: no eggs or dairy.
  • Almond flour adds a rich, slightly buttery flavor and tender texture.
  • Minimal kneading and a fun, simple stuffing process make these bagels approachable.
chocolate chip cherry bagels

Ingredients Used to Make Black Forest Chocolate Chip & Cherry Stuffed Bagels

Note: many ingredients are available at local grocery stores. Some product links were used for reference on the original site.

  • Bread Flour – recommended for the best bagel texture and chew. Weigh flour when possible for accurate results (1 cup = 120 g).
  • Almond Flour (optional) – used for added flavor and tenderness; substitute with extra bread flour (see notes below) if you prefer a chewier bagel.
  • Instant Yeast – convenient and reliable; instant yeast works without pre-activating.
  • Sugar – any granulated sugar works; raw cane, coconut sugar, or other sweeteners may be used. Avoid sugar-free substitutes in the dough itself, as they can affect rise.
  • Salt – regular table salt or specialty salts are fine.
  • Dark Cocoa Powder – dark cocoa provides a deep chocolate color and flavor.
  • Milk of Choice – unsweetened almond milk was used, but any dairy or non-dairy milk will work.
  • Cherries – frozen cherries thawed and drained work well; fresh cherries are also fine or omit if desired.

Filling Ingredients

  • Chocolate Chips – use your favorite chocolate chips or chopped chocolate. Lower-sugar or unsweetened options are fine depending on taste.

Recipe Overview

This recipe yields 4 extra-large stuffed bagels (or about 3 if unstuffed). Prep time is around 20 minutes, cook time about 25 minutes, with a resting/fermentation window of roughly 8 hours for the overnight method. Calories and nutrition are estimated per bagel.

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Chocolate Chip & Cherry Stuffed Bagels

Makes 4 extra-large stuffed bagels (or 3 unstuffed). Adjust servings as needed.

Prep Time: 20 mins
Cook Time: 25 mins
Resting Time: 8 hrs (overnight method)
Course: Breakfast
Cuisine: American
Servings: 4 bagels
Calories: ~461 kcal per bagel

Ingredients

Bagel Dough Ingredients

  • 2 cups bread flour (about 240 g)
  • 1/2 cup almond flour (about 54 g) — or substitute 1/4 cup (30 g) extra bread flour for chewier texture
  • 2 tsp instant yeast (6 g)
  • 1/4 cup sugar (about 37 g)
  • 1/2 tsp salt (about 3 g)
  • 2 Tbsp dark cocoa powder
  • 1/2 cup almond milk (about 136 g), plus up to 2 Tbsp more if needed
  • 1/2 cup chopped cherries, thawed and drained if using frozen

Filling Ingredients

  • 1/2 cup chocolate chips (or chopped chocolate)

Instructions

Combine the Dough Ingredients

  1. In a mixing bowl, combine the bread flour, almond flour, instant yeast, sugar, salt and cocoa powder.
  2. Add the almond milk and mix with a dough whisk or by hand until the ingredients form a stiff dough. Add extra milk 1 Tbsp at a time only if needed. The dough should be firm—bagel dough has a lower hydration than other breads.
  3. Fold in the chopped cherries.
  4. Loosely cover and let the dough rise in a warm spot for 60–90 minutes, until puffy.

After the First Rise (Choose one method)

  1. No-knead overnight: Gently deflate, cover loosely, and refrigerate for at least 8 hours (up to 48 hours).
  2. Kneaded quick method: Knead by hand or with a stand mixer until the dough is smooth and elastic (about 3 minutes by hand after the initial rest).

Shaping the Dough

  1. Turn the dough onto a floured surface. If refrigerated, bring it to room temperature (about 3–4 hours).
  2. Shape the dough into a ball and divide into 4 equal pieces.

Filling the Bagels

  1. Mix the chocolate chips in a small bowl for the filling.
  2. Roll each piece into a thin rectangle (about 5 x 7 inches, thinner is better).
  3. Spoon 2–3 Tbsp of filling onto the dough. For a thick crescent filling place it on one end; for a swirled filling spread it evenly.
  4. Roll the dough over the filling and pinch seams to seal. Wet fingers with water to help seal if needed.
  5. Join the ends, tucking one into the other and pinching to secure so the bagel won’t open while boiling.
  6. Place stuffed bagels on parchment-lined sheet, loosely cover, and proof 40–60 minutes until slightly puffed.

Boil the Bagels

  1. Preheat the oven to 350°F (175°C). Bring a large pot of water to a gentle boil.
  2. Using a wide slotted spoon, lower one bagel into the water and boil 30 seconds per side (about 60 seconds total).
  3. If a bagel does not float after boiling, it likely needs more proofing time.
  4. Remove with the slotted spoon and return to the parchment-lined sheet. Repeat for remaining bagels.

Bake the Bagels

  1. Bake the boiled bagels for 20–25 minutes, until tops are glossy and slightly browned.
  2. Cool to room temperature before slicing. For the cleanest cut, allow the filling to fully cool so it sets slightly.

Notes

  • Almond flour adds flavor and tenderness but reduces chew. For a traditional chewy bagel, use 1/4 cup bread flour instead of the almond flour.
  • Gluten-free flours cannot be substituted for the bread flour in this recipe.
  • All-purpose flour may be used in place of bread flour but will produce a softer, less chewy bagel.
  • Other nut flours (pecan, walnut, cashew) can replace almond flour if desired.

Storage

  • Unstuffed bagels: store airtight at room temperature for 3–4 days.
  • Bagels with perishable fillings (for example, cream cheese): keep at room temperature for up to 1 day, refrigerate up to 7 days, or freeze for up to 3 months. Reheat in a toaster or air fryer with the filling side up.

Variations and Add-Ins

Customize these bagels with nuts, seeds or dried fruit for extra texture and nutrition:

  • Nuts: chopped walnuts, pecans, cashews.
  • Seeds: poppy, sesame, pumpkin, sunflower, flax, chia.
  • Dried Fruit: chopped apricots, raisins, dried cranberries, dried cherries, candied ginger, citrus zest.

More Bagel Tips

  • Weigh your flour for best results. If measuring by cup, spoon flour into the cup and level with a straight edge rather than scooping.
chocolate chip cherry bagels